PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 470423
Common NameARALYDRAFT_470423
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 154aa    MW: 17599.8 Da    PI: 9.7924
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
470423genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.40.00049828222
             EETTTTEEESSHHHHHHHHHH CS
  zf-C2H2  2 kCpdCgksFsrksnLkrHirt 22
             +C +C+++F ++++L +H + 
   470423  8 ECAICKRVFLSSHHLISHFND 28
             6*****************765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.265735IPR007087Zinc finger, C2H2
PROSITE patternPS000280930IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MAFSNPQECA ICKRVFLSSH HLISHFNDVH SNRHGSTFSS SAIATPTSFR HYPNVNRNPN  60
PDFQARNHFD VNYYRRGYLD DHGRFHKGCS PTPVITPTRK YKFLLPKMPT TPKLMDLFPT  120
LPLIWQLEQR RAEDSAVTEN GGANSSSIDL SLRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4934302e-76AB493430.1 Arabidopsis thaliana At1g04445 mRNA for hypothetical protein, partial cds, clone: RAAt1g04445.
GenBankCP0026842e-76CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankF19P192e-76AC000104.1 Sequence of BAC F19P19 from Arabidopsis thaliana chromosome 1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002889506.11e-113hypothetical protein ARALYDRAFT_470423, partial
TrEMBLD7KDE81e-113D7KDE8_ARALL; Putative uncharacterized protein (Fragment)
STRINGfgenesh2_kg.1__377__AT1G04445.11e-113(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM135511321
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04445.14e-72C2H2-like zinc finger protein